rs30470302 SNP Detail

Summary

• ID
  rs30470302
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144993948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT AAATCCCCAC AGTGATCCCT
  S
  AGTCCCCAGT AGTGTCCTCC GTGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45933415	mCV23990310	ABI	CRAMUS_MOUSE	f	SNP	C	G
ss322067435	CHEV_6_144996742	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs30470302					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144993948 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	within coordinates
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr145932	regulatory region 145932	within coordinates
Tssr2055	transcription start site region 2055	825 bp downstream
Tssr59519	transcription start site region 59519	316 bp upstream
Tssr64030	transcription start site region 64030	699 bp upstream
Tssr64031	transcription start site region 64031	668 bp upstream
Tssr64032	transcription start site region 64032	608 bp upstream
Tssr64033	transcription start site region 64033	562 bp upstream
Tssr64034	transcription start site region 64034	525 bp upstream
Tssr64035	transcription start site region 64035	465 bp upstream
Tssr64036	transcription start site region 64036	363 bp downstream
Tssr64037	transcription start site region 64037	379 bp downstream
Tssr64038	transcription start site region 64038	434 bp downstream
Tssr64039	transcription start site region 64039	454 bp downstream
Tssr64040	transcription start site region 64040	473 bp downstream
Tssr64041	transcription start site region 64041	488 bp downstream
Tssr64042	transcription start site region 64042	508 bp downstream
Tssr64043	transcription start site region 64043	527 bp downstream
Tssr64044	transcription start site region 64044	587 bp downstream
Tssr64045	transcription start site region 64045	617 bp downstream