rs30470777 SNP Detail

Summary

• ID
  rs30470777
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123621998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTGGA GATAAATCTG
  AAGAAATAGA AACGGAGAAT GAATGTGTTA CTTTTAGCGC AGCTTCTTTT GGGGTCTCAT
  GTCCCTGATT GTGCTTGGCT GGGTGTAGGA ACCAAAGTCT CGAAGGAACC AGCCTTTGGG
  GACCGGACAA CTTATAGATC ACTTTAGTGT TCCTTGTTTT CCCTATCCCA TCATCTGCCC
  W
  TCTAGTCTGG TACAGTTCTC TCTCTTCAGG AGGTCCCAGT ACTCTCACTT ATGGGCTTCT
  TGGGGTTTGA GTGAAGAGTG GGGCCGCAAG TCTCTGCCCT CACTTGTCTA GCTGCTCTGA
  GGTGCCAGTG GTCAGGACTG CATGGGGAAA TGAAGTAGGT GCCATGGGCT GTCTCAGCAG
  AGGCCAGAAT GTACAGGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46410198	mCV23332191	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss323234340	CHEV_9_123702051	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30470777					SNP	A	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123621998 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	867 bp upstream
Tssr92158	transcription start site region 92158	861 bp upstream
Tssr92159	transcription start site region 92159	837 bp upstream
Tssr92160	transcription start site region 92160	462 bp upstream
Tssr92161	transcription start site region 92161	441 bp upstream
Tssr92162	transcription start site region 92162	1892 bp downstream