rs30470781 SNP Detail

Summary

• ID
  rs30470781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110976283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTTGTA AGGAGTTCCA
  GGTCAAGTTA GAGTTTTATC TTTGACACCT TTTTTTTTGC TTTATGTATT TGATTTATAT
  TATTCTGTAC AAGTTGAGTT TGTCAGAGAA AATAATTCCA TGAGTTAGGG TTCTTCCTCT
  TTGTAATTTT AGTGTTCTCA GTGTTGATTC ACAAAATTCA TAAATTATTA TGAAATAGCA
  R
  TTTCTTATTT TACTTAGGAG AAGTCAATGT CTTTCCATTT CTACACAGTT AAAAACAATC
  AAATGTCCTC CTTTCTGATT ACTGACTTTA CTAGCACGTC GTCTGAAAGA GCTGGTCTAA
  GTTGTACCTT TACCCAGAAT TCTTTCAGGT GTCTTACAGT ATGCATTGAG CCAGTCTGTT
  TCTCCCTTAT CCTCAGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46410203	mCV23786679	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss136962450	ENSMUSSNP4344735	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss323195928	CHEV_9_111049719	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30470781					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110976283 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	within coordinates
Rr687308	regulatory region 687308	1865 bp proximal
Tssr87483	transcription start site region 87483	491 bp downstream
Tssr87484	transcription start site region 87484	818 bp upstream