rs30471062 SNP Detail

Summary

• ID
  rs30471062
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136936784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAGGCGGG CTGGTTCTGG TGTGTGAGCG
  AGCCCCTCAC TTCTGGCCTG TCTAACAGGA TCTCTGCTGT AGAATGCCAG GAACAACAGT
  GCTATTTCAA CTTCCCCGTT AGCATTTGCG GTTTGAGGAC CCTGTCTAGG GAGGAACTCC
  W
  TTCTGAAGGG GACAATGCTG GTTAGCCTAG GGGCAGGGCT GGAGATGGAG AGCGTGGCCC
  GTTGTTGGAG GAAGTGTGCC CTTGTGTGTT GAATTTTTAA ACACACTTCT TATTACCTGA
  AGCAGAATGC TCACCACTTC AATCCTAGTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44931852	mCV23233683	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		A
ss51384398	NES14473729	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		A		T	T		A	T	T	A		T
ss319997355	CHEV_1_138905623	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30471062					SNP	T	T	T	T	T	T	T	T	A	A	T	T	A	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51384398	NES14473729	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136936784 () rs orientation: forward

Symbol	Name	Function Class
Gm70790	predicted gene, 70790	within coordinates
Rr419562	regulatory region 419562	1222 bp proximal
Rr419563	regulatory region 419563	1328 bp proximal