rs30471122 SNP Detail

Summary

• ID
  rs30471122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78524358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCCGCTT TCTGGTGACA
  GCCCCAGGGA TCATCAGACC CGGAGCAAAT GTGACTATTG GGGTGGATCT CCTGGAAAAT
  AGCCCCCCAC AGGTCCTTGT AAAGGCTCAG GTGTTCAAGA TAGCTTCCAA CAAATCGAGA
  TCCATCCTGG AAGCAGAAGG AGTCTTTCAC AGAGGTAAGA GAAACTGCAC TGTCTAACAG
  Y
  CACACTTGGA ATATGGTAAT AGAGCCCTGG GCTAGGCAAC ACAACAGAGG AGCACAAACA
  AGTTTGCAGT GATTTCCACA GTGCCCCTTT GCAAATTAGC CGTGACTTCC ACAGGTGCCT
  GTTTGATTCT AACACCTGTG AAGTCTGAAA TTGTCCCCGA GTGTTCCAAC AAGTGGACAA
  AGAGCCAGAT TCCTTCCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46410404	mCV22794991	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss136669101	ENSMUSSNP1521572	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30471122					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78524358 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	Intron
Cpgi22073	CpG island 22073	992 bp distal
Gm69315	predicted gene, 69315	1419 bp upstream
Rr683598	regulatory region 683598	1520 bp distal
Rr683599	regulatory region 683599	929 bp distal
Tssr86295	transcription start site region 86295	1602 bp downstream
Tssr86296	transcription start site region 86296	1583 bp downstream
Tssr86297	transcription start site region 86297	1567 bp downstream
Tssr86298	transcription start site region 86298	1333 bp downstream
Tssr86299	transcription start site region 86299	1290 bp downstream
Tssr86300	transcription start site region 86300	1267 bp downstream
Tssr86301	transcription start site region 86301	1244 bp downstream
Tssr86302	transcription start site region 86302	1195 bp downstream
Tssr90659	transcription start site region 90659	1419 bp upstream