rs30471254 SNP Detail

Summary

• ID
  rs30471254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134096795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGTTTT CAAAGAGGTA
  TTTTTCTGTA AGTCCCATTG AGAGCTGGTG TTTTAACGGA GGTCTTTTAA ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACGGTT AAATATGTAC TTTGTAAATA
  AAGACCCCAT GTGTTTGGTT GGTAGGATGC TCCTTAAGAC AGACTCCCAT CAGACTTCAG
  R
  ACTGAAGGGC AGAGAGGGCA GAGCGTGCCC CTCCTGGAAG GGAGAAATGA GCAGATAGCC
  CCCACGGCTG GCAGTTGGAT TCAAATTTTT GTTAATAAGC CACTAATGGC TCTAGATGAA
  AACCGAACAA AACACAAACT TGGGTTAGCA TGGAGAAACG ATTCCAGTGA CATTGTCTAA
  TGAGGCTCGC TCATTTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45933417	mCV24118099	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss133771342	ENSMUSSNP3556114	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321976682	CHEV_6_134069850	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30471254					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134096795 () rs orientation: forward

Symbol	Name	Function Class
D6Mit374a	DNA segment, Chr 6, Massachusetts Institute of Technology 374a	209 bp distal
D6Mit374b	DNA segment, Chr 6, Massachusetts Institute of Technology 374b	209 bp distal
Etv6	ets variant 6	within coordinates
Rr639573	regulatory region 639573	338 bp distal
Rr639574	regulatory region 639574	706 bp proximal