rs30471299 SNP Detail

Summary

• ID
  rs30471299
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145809307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGC GTCAGGAGCT GGGTGGCCAC
  S
  GCATGCAGGT GGCTGACGAG CTGTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45933075	mCV24099287	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss322074609	CHEV_6_145812101	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30471299					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145809307 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe41	basic helix-loop-helix family, member e41	within coordinates
Cpgi18162	CpG island 18162	within coordinates
Cpgi18163	CpG island 18163	1555 bp proximal
Gm43909	predicted gene, 43909	within coordinates
Gm67122	predicted gene, 67122	within coordinates
Gm67128	predicted gene, 67128	300 bp upstream
Tssr59561	transcription start site region 59561	817 bp downstream
Tssr59562	transcription start site region 59562	263 bp upstream
Tssr64073	transcription start site region 64073	1562 bp upstream
Tssr64074	transcription start site region 64074	1357 bp upstream
Tssr64075	transcription start site region 64075	1147 bp upstream
Tssr64076	transcription start site region 64076	901 bp upstream
Tssr64077	transcription start site region 64077	754 bp upstream
Tssr64078	transcription start site region 64078	397 bp upstream
Tssr64079	transcription start site region 64079	330 bp upstream
Tssr64080	transcription start site region 64080	18 bp downstream
Tssr64081	transcription start site region 64081	39 bp downstream
Tssr64082	transcription start site region 64082	63 bp downstream
Tssr64083	transcription start site region 64083	90 bp downstream
Tssr64084	transcription start site region 64084	236 bp downstream
Tssr64085	transcription start site region 64085	1107 bp downstream
Tssr64086	transcription start site region 64086	1306 bp downstream
Tssr64087	transcription start site region 64087	1754 bp downstream
Tssr64088	transcription start site region 64088	1790 bp downstream
Tssr64089	transcription start site region 64089	1804 bp downstream
Tssr64090	transcription start site region 64090	1851 bp downstream
Tssr64091	transcription start site region 64091	1863 bp downstream
Tssr64092	transcription start site region 64092	1902 bp downstream
Tssr64093	transcription start site region 64093	1967 bp downstream
Tssr64094	transcription start site region 64094	1983 bp downstream