rs30471589 SNP Detail

Summary

• ID
  rs30471589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135979152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCACCCCC GACGGCGCGC
  CACCTCCCGC CACCTCCCCG CCGCCCGCCC ACACGGGCCA CAGCAACGTG CCGCAGCCCT
  CTTCCTTGGT GGCCGAGTCC AGTGGATCCC CCTTTTCCTC GTCGCCTTTT TTGGAGTCGG
  AGGAACCCAG CCTTTGATCT GGCCAGAGGC CTGGACTTGC CCCTCTAGGG AACAGCTTTG
  R
  GGGCTTCTGG GTCATCTGTG CGGGACAAAG AACAGTGGTG TTCGAGGTCT GTGATCCCAC
  CTCCACCCAC TTGAGCCAGA TGTGAGGGCC TGGGGTAGAG ATGGCGAGAT ACGGATCCCA
  GGAGCTGATG TCTGCGGTGA GGAGCAGAGC CCTGGACAGC TCCTGGACCA GCCTCAGCGA
  AGCTCTGCTG TCCACCACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44932246	mCV23000178	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30471589					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135979152 () rs orientation: forward

Symbol	Name	Function Class
Ascl5	achaete-scute family bHLH transcription factor 5	44 bp downstream
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	1397 bp upstream
Cpgi803	CpG island 803	within coordinates
Rr419345	regulatory region 419345	600 bp distal
Rr419346	regulatory region 419346	166 bp distal
Tssr9037	transcription start site region 9037	1340 bp upstream
Tssr9038	transcription start site region 9038	1357 bp upstream
Tssr9039	transcription start site region 9039	1390 bp upstream
Tssr9040	transcription start site region 9040	1532 bp upstream