rs30471595 SNP Detail

Summary

• ID
  rs30471595
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72887137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTCACCC AGATTTTTTT
  TTGGTTTGTT TTTGGGACCA GATTTTGCTG GGTAACCATG GCTGTCCTGG AATTCACTCT
  TTAGACCAGG TTGGTCTCTA ACTCACAGAG ATCCACCTGC CTCTGCCTCT CAAGTGCTTG
  GATTAAAGGC ATGTGCCAGC ATCTCCTGGC TTCACGTAGT TTTTTATTAG GACTTTGTGG
  K
  CTTGTGTTTC TGGATGGCTG GGGTGGGGCT AAGACGCCTT GACTTTTAGA ACATGCTGGT
  ACTTGTCCCC CTGGTCTCAG ACTGACCACA CAACCCTTCC CTGGAGAGAC ATTTGTCAGC
  TAGGCTGAGA CTGGGAACTA GGGGCTGCTT TGAGTGTTTG TGTGCACACA GTTGGCTCTA
  TGAGAGTGAT TCTCAATGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss44932914	mCV23053083	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	T
ss144663572	ENSMUSSNP1184158	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30471595					SNP	T	T	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72887137 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	1101 bp upstream
Tssr7322	transcription start site region 7322	1130 bp upstream
Tssr7323	transcription start site region 7323	1173 bp upstream
Tssr7324	transcription start site region 7324	1222 bp upstream
Tssr7325	transcription start site region 7325	1237 bp upstream
Tssr7326	transcription start site region 7326	1267 bp upstream
Tssr7327	transcription start site region 7327	1296 bp upstream
Tssr7328	transcription start site region 7328	1599 bp upstream
Tssr7329	transcription start site region 7329	1634 bp upstream
Tssr7330	transcription start site region 7330	1648 bp upstream
Tssr12178	transcription start site region 12178	1137 bp downstream
Tssr12179	transcription start site region 12179	1180 bp downstream
Tssr12180	transcription start site region 12180	1244 bp downstream
Tssr12181	transcription start site region 12181	1265 bp downstream
Tssr12182	transcription start site region 12182	1308 bp downstream
Tssr12183	transcription start site region 12183	1329 bp downstream