rs30471603 SNP Detail

Summary

• ID
  rs30471603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157332920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG AAGTAGTCTG GACTGAACAC
  Y
  GAGTCCAGCA TTATCCCTGT GTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss44932922	mCV23079551	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss145822580	ENSMUSSNP4221817	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30471603					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157332920 () rs orientation: forward

Symbol	Name	Function Class
Gm15486	predicted gene 15486	within coordinates
Rr421396	regulatory region 421396	894 bp proximal
Rr421397	regulatory region 421397	1217 bp proximal
Rr421398	regulatory region 421398	1471 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor	1383 bp upstream
Tssr9592	transcription start site region 9592	1407 bp upstream
Tssr9593	transcription start site region 9593	1427 bp upstream