rs30471775 SNP Detail

Summary

• ID
  rs30471775
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125198665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA TCTCTGGAGA AGAAGCAACA
  Y
  TGTCCTTGGT GTGTCCCAAG CCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45933264	mCV22303667	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss60940118	NES16188575	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T		C	T	T	C		C
ss133614209	ENSMUSSNP1911569	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss321938665	CHEV_6_125171720	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30471775					SNP	C	C	T	T	T	C	T	C	C	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60940118	NES16188575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125198665 () rs orientation: forward

Symbol	Name	Function Class
Rr133010	regulatory region 133010	1736 bp proximal
Rr147527	regulatory region 147527	within coordinates
Rr368188	regulatory region 368188	485 bp upstream
Tssr58933	transcription start site region 58933	22 bp upstream
Tssr58934	transcription start site region 58934	123 bp upstream
Tssr58935	transcription start site region 58935	187 bp upstream
Vamp1	vesicle-associated membrane protein 1	within coordinates