rs30471897 SNP Detail

Summary

• ID
  rs30471897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97553836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC TCTCTCCTTT
  TTTTAACAGT AAAAAGTGTA GCACAATATC ATGGCCAAGA TAAGAACACA GTCAAAGATG
  TGCCCTTCCT CTCCCACAAG CATTCCTTGT GGTTCCTTTC TATCACCACA CCCATGTCGT
  CCCACCCTCA GCCCTCCACA CTCCATGGGG TCACAGCTAG GATGCTGGTG TGAGACTCCC
  R
  CTCTGTTTGG CTTCCCTGAG ACCTACTGCT GGGTGGGGAG ATAGCGGTGC TTTGTTCTTC
  CTGAGAACCC AAGAGTTCTT AGCAAGAGAA GAGAAATAGC TGGCTATCAC TGTTGACAGT
  GGTCATGATA AACACCCCCA GATCTTCCAG AACAACATGA CATCATCCAA CTGGGGAGAG
  ATGGAAGTTC ACGCTTCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49138244	NES12480187	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30471897					SNP	A	A	A	A	A	A	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49138244	NES12480187	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97553836 () rs orientation: forward

Symbol	Name	Function Class
Rr274314	regulatory region 274314	1036 bp distal
Rr277788	regulatory region 277788	within coordinates
Rr285518	regulatory region 285518	1037 bp distal
Rr286473	regulatory region 286473	1725 bp proximal