rs30471965 SNP Detail

Summary

• ID
  rs30471965
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41492682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGC TCCTGGAAGC TCTGCAACTA
  K
  GCTCCACTTC AAATGGGTGA GTTTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46410128	mCV23037835	ABI	CRAMUS_MOUSE	f	SNP	G	G				T
ss61386154	NES16764722	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G	G	G	G		T	G	T		G
ss322927323	CHEV_9_41389469	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30471965					SNP	G	G	G	G	G	T	G	G	G	G	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386154	NES16764722	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41492682 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	522 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	540 bp upstream
Rr677060	regulatory region 677060	1882 bp distal
Rr677061	regulatory region 677061	1398 bp distal
Rr677062	regulatory region 677062	35 bp distal
Rr677063	regulatory region 677063	within coordinates
Rr677064	regulatory region 677064	80 bp proximal
Rr677065	regulatory region 677065	296 bp proximal
Rr677066	regulatory region 677066	627 bp proximal
Rr677067	regulatory region 677067	754 bp proximal
Rr677068	regulatory region 677068	1481 bp proximal
Tssr84512	transcription start site region 84512	1717 bp downstream
Tssr84513	transcription start site region 84513	1669 bp downstream
Tssr84514	transcription start site region 84514	1494 bp downstream
Tssr84515	transcription start site region 84515	1419 bp downstream
Tssr84516	transcription start site region 84516	1395 bp downstream
Tssr84517	transcription start site region 84517	1369 bp downstream
Tssr84518	transcription start site region 84518	669 bp downstream
Tssr84519	transcription start site region 84519	634 bp downstream
Tssr84520	transcription start site region 84520	464 bp downstream
Tssr84521	transcription start site region 84521	419 bp downstream
Tssr84522	transcription start site region 84522	382 bp downstream
Tssr84523	transcription start site region 84523	286 bp downstream
Tssr84524	transcription start site region 84524	126 bp downstream
Tssr84525	transcription start site region 84525	70 bp downstream
Tssr84526	transcription start site region 84526	35 bp downstream
Tssr84527	transcription start site region 84527	614 bp upstream
Tssr84528	transcription start site region 84528	1638 bp upstream
Tssr88995	transcription start site region 88995	1863 bp upstream
Tssr88996	transcription start site region 88996	1823 bp upstream
Tssr88997	transcription start site region 88997	578 bp upstream