rs30472234 SNP Detail

Summary

• ID
  rs30472234
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48267019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGG ACAGACAAAT TTCAGGGGAG
  K
  CCCCTCGTTC AATGGCTGCA AGTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45933081	mCV22323326	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
ss133161981	ENSMUSSNP4884108	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss321792997	CHEV_6_48240084	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30472234					SNP	?	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48267019 () rs orientation: forward

Symbol	Name	Function Class
Gm22122	predicted gene, 22122	658 bp downstream
Gm30362	predicted gene, 30362	within coordinates
n-TCgca12	nuclear encoded tRNA cysteine 12 (anticodon GCA)	1138 bp upstream
Tssr56117	transcription start site region 56117	858 bp downstream