rs30472739 SNP Detail

Summary

• ID
  rs30472739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188739789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCCCTG CCGAGGGTAC
  CCCACCTGGC CGTGCAGACG CCGCCCCGGC TGTAACACCT ATCCCACCTA GGCTGGCACA
  TGCCACTCCT ACAGCAGCGG GCGTCCCACC CACTGTTCCC GCGCGGTCGC GGGCTCACCT
  GGTCCCCCCC ACATTCAGCT GCACGATCTC CCCGCTGCTG GCCGCCGACG CGGCGAAGCT
  R
  CCGCAATGCC CGCCCGCCAT GTCTGCGGCG GGAGCCGGAG CCAGGGCCGG AGCCGGAGCC
  GGAGCCAGGA GCGGCGGCTC GGCGGCCGGA GCACACTCGG AACGCCGAGC CTCCCGCAGC
  GGCCCGGCTC GCTCCAGCCT CCCCCACTAC GTGTTCGTGG CCTCCGCCGC TCGTGGCTGG
  AGGCCGCCGG CCCAGCCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss44932161	mCV23589550	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30472739					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188739789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1193	CpG island 1193	within coordinates
Kctd3	potassium channel tetramerisation domain containing 3	within coordinates
Rr372619	regulatory region 372619	within coordinates
Rr425737	regulatory region 425737	1010 bp distal
Rr425738	regulatory region 425738	within coordinates
Rr425739	regulatory region 425739	238 bp proximal
Tssr15707	transcription start site region 15707	237 bp downstream
Tssr15708	transcription start site region 15708	264 bp downstream
Tssr15709	transcription start site region 15709	302 bp downstream