rs30472812 SNP Detail

Summary

• ID
  rs30472812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64698263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTATTCT CGGACTCTCT
  CCTGCTGTGG ACTTGGGTAA TCTGTAACTA CTCTGGAACC CAGTTTCCTC ATCACTTGCT
  CTATTTTTGG GTCAAACTGC ACGGACGCTG CCTGTGCATG CTGCATGATT TCCCAACTCA
  CTCTCCTTGT CTTTATAGTT ACTTCTCTAA CATGATCTTC CAGCCTGGCT GGTAGCTCAT
  Y
  TAGTAAGTGC TTGTCTAGCT AGCATAAAGC CCTGGCCATG TCTCAAACGA AAAGGACGTT
  TTCAATTTTC TAATATATAG CAGCAGATTT TTTTTAAAAG CCATCATTTA TATGCATACA
  TCACATTTAG CTCCATTTTA ATGTGCCATA CTTCTGTGTG CCTTATATCT GCCAAACAGA
  TGAAGATCAA CAGAGGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46410804	mCV25282064	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss136565254	ENSMUSSNP4520323	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
ss322985866	CHEV_9_64638788	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30472812					SNP	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64698263 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	1249 bp downstream
Rr681316	regulatory region 681316	1127 bp distal
Rr681317	regulatory region 681317	within coordinates
Rr681318	regulatory region 681318	283 bp proximal
Rr681319	regulatory region 681319	1086 bp proximal
Tssr2909	transcription start site region 2909	171 bp upstream
Tssr85622	transcription start site region 85622	1324 bp downstream
Tssr85623	transcription start site region 85623	1304 bp downstream
Tssr85624	transcription start site region 85624	14 bp downstream
Tssr90157	transcription start site region 90157	153 bp upstream