rs30472877 SNP Detail

Summary

• ID
  rs30472877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97551877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTC CAAGATAGGA CAGACACAAA
  Y
  CTAGGATCCT TTGGGATCAA CAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49138259	NES12480373	PERLEGEN	MM_PANEL2	f	SNP			C	T	T	T		C	T		T
ss145035245	ENSMUSSNP3202529	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T				T
ss324496769	CHEV_13_98185324	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30472877					SNP	T	T	C	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49138259	NES12480373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97551877 () rs orientation: forward

Symbol	Name	Function Class
Rr274314	regulatory region 274314	524 bp proximal
Rr277788	regulatory region 277788	1924 bp proximal
Rr285518	regulatory region 285518	within coordinates