rs30472879 SNP Detail

Summary

• ID
  rs30472879
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97550936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACGCTGAG CCATGGCTTA
  GCAGTGAAGC TCTGAGAGTG CTGCCATGGT CATATGGTCA TGTCAGTACA GGTTTAAACA
  CTGAATGTCC ATCACAGCAT CTTACCAACT GCTGAGTCCT CCCTCTGAAT CATTCCATCT
  TATCTGAGCA ACAGCAGTGT GGGCAGAGTC CTGAACAGTA GGTTTAAGTC CTGGCTGCCC
  S
  TTACCCACTA CTGACTCGGG CACCTCATTT CCCCAACACC ACACTGAGTT AGTTTCCTCA
  TCTGAAGAAT GGCAGTATTT ACTCAGTTAT CAAGAAAGTT AGGGGGCTGG AGAAATGGCT
  CAGTGGTTAA GAGCACTGAC TGCTCTTCCA GAGGTCCTGA GTTCAATTCC CAGCAACCAC
  ATGGTGACTC ACAACCATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49138266	NES12480544	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30472879					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49138266	NES12480544	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97550936 () rs orientation: forward

Symbol	Name	Function Class
Rr274314	regulatory region 274314	1465 bp proximal
Rr280761	regulatory region 280761	1845 bp distal
Rr285518	regulatory region 285518	938 bp proximal