rs30475462 SNP Detail

Summary

• ID
  rs30475462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108888626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCCAAA GGCCTTCCTA
  GATCCATATC TGTGATCCTG CTGGCTGGTA AAATGGACTA CTGCCCCAAC ACTGACAACT
  CAAACTGGGT TGTCTCTAGG ATTCAAATGT GCCCGTGAGC CTCTGCCTTT TCTTGTCTTT
  CCCCCAGTCC TTGATCCAGG CCTTCCTAAA AAGGGCTGCC TCCTTGGCCA CAAACGTACC
  Y
  CTGCCCCCAC CACGGCCCCC GCCCAAAGCT ATGACTCAGG GTAATTCCCG AAGAGGGGCA
  GGGTTTTTCC TCAGGGCAGA TCAGTTACCA TGGGGGCCAT CTCAACTCCA GCAGGAGTCA
  TCTCATCAAT TCTTGGTCTG CCCTGTCCCT CCCTCTCAGC CACACAAATC GGACTCAGGA
  AACAAAGCTT GTGTTCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46411713	mCV23599042	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30475462					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108888626 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	189 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	61 bp upstream
Rr686956	regulatory region 686956	1693 bp distal
Rr686957	regulatory region 686957	within coordinates
Rr686958	regulatory region 686958	104 bp proximal
Rr686959	regulatory region 686959	250 bp proximal
Shisa5	shisa family member 5	1781 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr91571	transcription start site region 91571	1835 bp upstream
Tssr91572	transcription start site region 91572	1287 bp upstream
Tssr91573	transcription start site region 91573	1153 bp upstream
Tssr91574	transcription start site region 91574	920 bp upstream
Tssr91575	transcription start site region 91575	873 bp upstream
Tssr91576	transcription start site region 91576	787 bp upstream
Tssr91577	transcription start site region 91577	299 bp upstream
Tssr91578	transcription start site region 91578	118 bp downstream
Tssr91579	transcription start site region 91579	153 bp downstream