rs30477009 SNP Detail

Summary

• ID
  rs30477009
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178235478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAAATT AATTTACCTT
  ATGTGTATTG GTGTATTGCC TTTGTGTATG TCCTTGTGAG GGTGTCGGAT CCCCCAGAAC
  TGGAGTTGCA GATGGTTGTG AGCTGCCATG TGTGTTCTGG GAATTGATCC AGGATTCTCT
  GGAAGAGCAG GTAGTGCTTC TAACCTCTGA GCCATCTGTT TTTTTGTTTT TTGGGTTTTT
  K
  TTTTGTTTTG TTTTGTTTTT TAAACAAAAT CTAAATCATT TGGTTTTACC AATGAAAACC
  CGGGAGCCAG AATCTGTGGT GAAAGTTTGC TAGCTCAGAG AAGCAGAGAA AGCACCCAGC
  TGACCCTGCT CCTCAGCCAG TGTCCCAGAC ATTGTTTTTT TTTTTTTTTT TTTTTTTTTA
  AATAATCCTA TGTTTACTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss44932476	mCV22364014	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss146355594	ENSMUSSNP731890	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30477009					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178235478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	1243 bp distal
Efcab2	EF-hand calcium binding domain 2	within coordinates
Gm70920	predicted gene, 70920	1485 bp upstream
Gm70923	predicted gene, 70923	971 bp downstream
Rr29069	regulatory region 29069	677 bp distal
Rr372517	regulatory region 372517	875 bp downstream
Tssr10392	transcription start site region 10392	1893 bp downstream
Tssr10393	transcription start site region 10393	1879 bp downstream
Tssr10394	transcription start site region 10394	1868 bp downstream
Tssr10395	transcription start site region 10395	1843 bp downstream
Tssr10396	transcription start site region 10396	1808 bp downstream
Tssr10397	transcription start site region 10397	1353 bp downstream
Tssr15493	transcription start site region 15493	1474 bp upstream