rs30477115 SNP Detail

Summary

• ID
  rs30477115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44218335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACTAGCC ATTCTTGTGT
  TTTCAATGGA GACGGTCCTT TGCCTGAGAA TTGACTCTTC TTATTATGAT ATATTGTATT
  TGTGCTTACT ACTGTGCAGT CTACACTACC CAGTGAGAAA GACCAGTTGC GCCTATTTCT
  TCGTTTTTAT AAACCAGTCA CAGTCACACA ATCCAGTGAA GGAAATTCAG AATTTAAAAT
  Y
  GCCATGCTCA AGCCAGGCGT GGTAGTGCAT GCCTTTAATC CCAGCACTCG AGGGGCAGAG
  GCAGTCGGAT TTCTGAGTTC GAGGCCAGCC TGGTCTATAA AGTGAGTTCC AGGACAGCCA
  GGGCTACACA GAGAAACCCT GTCTCGAAAA AAAAAAAAAT GCCATGTGCG GCGGCACATA
  ATTTCACTCC TAGCACTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46410267	mCV23033155	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss47687460	NES11335276	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	T	T	T	T	T
ss136393670	ENSMUSSNP1616556	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30477115					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47687460	NES11335276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44218335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	964 bp distal
Hinfp	histone H4 transcription factor	1367 bp upstream
Rr195005	regulatory region 195005	666 bp proximal
Rr206299	regulatory region 206299	734 bp distal
Rr368726	regulatory region 368726	943 bp downstream
Tssr89139	transcription start site region 89139	1350 bp upstream