rs30477920 SNP Detail

Summary

• ID
  rs30477920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45237174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG GATCACACCT GCAGGTAGAT
  Y
  CGAAGTTCAA GGTCATCTCT GGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46410661	mCV24048476	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss136409333	ENSMUSSNP1365841	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss322943028	CHEV_9_45133959	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30477920					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45237174 () rs orientation: forward

Symbol	Name	Function Class
Rr203899	regulatory region 203899	995 bp distal
Rr203900	regulatory region 203900	8 bp distal
Rr203901	regulatory region 203901	547 bp proximal
Tmprss13	transmembrane protease, serine 13	within coordinates