rs30478626 SNP Detail

Summary

• ID
  rs30478626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70584239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGGGCT GGACAAACAT
  GATGACCTGA GTCATTCAGA GCCCAAATAA AGGTCAAGGA GAGAGCCCAC TCCATAAAGT
  TGTTCTCTGA CTCCCACATG CTTATTATGG GCCAAGTATC ACTCCCTCTC CCTCTACTTC
  TCCCCCTCCC TCTCCCCCAA CCCTCCCCCC CACCCCCCAG CTAAAAACCA AGGAATCACT
  R
  TTTTCCACTA GATTAGATAT TTGTTTGAGG AAATAAATGG CATTTATGTA CTTTATTTAC
  CATATAACAA TTATTATCTG CTAAGCACTT GTAATTGCTT TATAGTGTTA AGTGATCTGA
  ATTTAATCCA TCAAAATAGT TCCAAAAGGC AATTTTCATT TTACAAGGGA AATGCCAAGG
  TTACAAAGAA TTTTGAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46412787	mCV23565012	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30478626					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70584239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22004	CpG island 22004	1645 bp proximal
Rr197050	regulatory region 197050	639 bp distal
Rr201554	regulatory region 201554	639 bp distal
Rr206683	regulatory region 206683	1161 bp proximal
Rr401500	regulatory region 401500	1786 bp upstream
Tssr85928	transcription start site region 85928	1993 bp upstream