rs30480611 SNP Detail

Summary

• ID
  rs30480611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66825001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACT CAAACTTCCT TCAGCCCAGA
  Y
  ATCACAACAC CCAAATTTCC ATTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46412413	mCV23180032	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136576033	ENSMUSSNP3867653	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss322989024	CHEV_9_66765526	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30480611					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66825001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21974	CpG island 21974	1299 bp proximal
Rab8b	RAB8B, member RAS oncogene family	within coordinates
Rr368814	regulatory region 368814	1684 bp upstream
Rr401489	regulatory region 401489	1954 bp upstream
Rr681811	regulatory region 681811	685 bp distal
Rr681812	regulatory region 681812	51 bp distal
Rr681813	regulatory region 681813	229 bp proximal
Rr681814	regulatory region 681814	1958 bp proximal
Tssr85773	transcription start site region 85773	1119 bp upstream
Tssr85774	transcription start site region 85774	1146 bp upstream
Tssr90293	transcription start site region 90293	1109 bp upstream
Tssr90294	transcription start site region 90294	621 bp downstream
Tssr90295	transcription start site region 90295	1447 bp downstream
Tssr90296	transcription start site region 90296	1927 bp downstream