rs30481522 SNP Detail

Summary

• ID
  rs30481522
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCCAGT CCTTGTTTGT
  ATTTATTTTA TTTGGAGACA GTGTCTCCAC TAGCCCAGGC TAGACTCAGA TGAGCTCTGA
  TCTTTCTGCC CCATCTCCCA AGTGCTGGGG GTTTCAAGGA TGGTCCACCA CTGTTACTCT
  GTGCTGAGAC AAACCCAGAG CTCTGTGCAT GCAAGGCAAG CCCTCTACCA CCTGAGCTGC
  M
  TGCCAAGCCC AGACTGTTCA TTGTATAGAC TTGCCCGCTA TGGAGTGTAA CCAAGCACTC
  ATGTTCACAG GGTTGAGGAT GTCTGCAGAA GCACTCTCAC ACCAACAGCC TTCCTCTCAT
  CTGCCCCTCT TCATGCCTGT GTTGGTATGC AGGTGGTCTC CATCCATCCC CGGTGTATCT
  TCATGAGCCC CTGGCTGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J
ss46411876	mCV24051265	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J
rs30481522					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143130 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1363 bp downstream
Apoc3	apolipoprotein C-III	1218 bp downstream
Cpgi21701	CpG island 21701	1327 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1523 bp proximal
Rr206362	regulatory region 206362	729 bp distal
Rr206363	regulatory region 206363	1670 bp proximal
Tssr84847	transcription start site region 84847	1924 bp downstream
Tssr84848	transcription start site region 84848	1846 bp downstream
Tssr84849	transcription start site region 84849	1810 bp downstream
Tssr84850	transcription start site region 84850	1768 bp downstream
Tssr84851	transcription start site region 84851	1733 bp downstream
Tssr84852	transcription start site region 84852	1636 bp downstream
Tssr84853	transcription start site region 84853	1602 bp downstream
Tssr84854	transcription start site region 84854	1589 bp downstream
Tssr84855	transcription start site region 84855	1569 bp downstream
Tssr84856	transcription start site region 84856	1558 bp downstream
Tssr84857	transcription start site region 84857	1436 bp downstream
Tssr84858	transcription start site region 84858	1399 bp downstream
Tssr84859	transcription start site region 84859	1300 bp upstream
Tssr84860	transcription start site region 84860	1439 bp upstream
Tssr84861	transcription start site region 84861	1485 bp upstream
Tssr89313	transcription start site region 89313	1857 bp upstream
Tssr89314	transcription start site region 89314	1829 bp upstream
Tssr89315	transcription start site region 89315	1806 bp upstream
Tssr89316	transcription start site region 89316	1786 bp upstream
Tssr89317	transcription start site region 89317	1777 bp upstream
Tssr89318	transcription start site region 89318	1753 bp upstream
Tssr89319	transcription start site region 89319	1743 bp upstream
Tssr89320	transcription start site region 89320	1730 bp upstream
Tssr89321	transcription start site region 89321	1705 bp upstream
Tssr89322	transcription start site region 89322	1622 bp upstream
Tssr89323	transcription start site region 89323	1570 bp upstream
Tssr89324	transcription start site region 89324	1542 bp upstream
Tssr89325	transcription start site region 89325	1517 bp upstream
Tssr89326	transcription start site region 89326	1483 bp upstream
Tssr89327	transcription start site region 89327	1369 bp upstream
Tssr89328	transcription start site region 89328	1267 bp downstream
Tssr89329	transcription start site region 89329	1338 bp downstream
Tssr89330	transcription start site region 89330	1384 bp downstream
Tssr89331	transcription start site region 89331	1417 bp downstream
Tssr89332	transcription start site region 89332	1492 bp downstream