rs30483449 SNP Detail

Summary

• ID
  rs30483449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78522324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG CGATGATTAC AAGGACCCAA
  Y
  CATTTTCCCA AGCAGTTGCT TCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46412543	mCV22795009	ABI	CRAMUS_MOUSE	f	SNP	T	T				C		T
ss61426860	NES16809509	PERLEGEN	MM_PANEL2	f	SNP			T	T	T		T	C	T		C	T		C
ss136669089	ENSMUSSNP342495	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss323016772	CHEV_9_78462849	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30483449					SNP	T	T	T	T	T	C	T	?	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426860	NES16809509	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78522324 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	504 bp upstream
Cpgi22073	CpG island 22073	453 bp proximal
Gm69315	predicted gene, 69315	within coordinates
Rr683597	regulatory region 683597	446 bp distal
Rr683598	regulatory region 683598	241 bp proximal
Rr683599	regulatory region 683599	602 bp proximal
Tssr86295	transcription start site region 86295	410 bp upstream
Tssr86296	transcription start site region 86296	440 bp upstream
Tssr86297	transcription start site region 86297	459 bp upstream
Tssr86298	transcription start site region 86298	696 bp upstream
Tssr86299	transcription start site region 86299	715 bp upstream
Tssr86300	transcription start site region 86300	762 bp upstream
Tssr86301	transcription start site region 86301	779 bp upstream
Tssr86302	transcription start site region 86302	795 bp upstream
Tssr90659	transcription start site region 90659	603 bp downstream