rs30484349 SNP Detail

Summary

• ID
  rs30484349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTCTC TCTCCCCAGA
  TCGAGGCTCA GTGAGACACT GACAAGTAGC TAGAGCTGCA GCAGGAAAAA CAAGGCTAGA
  TTGATCCTGA CCCTTTCCTA ACCCTGCCCC TCACTGCTAA GTGACTCCAC AGACAACTTC
  CCGAAAAGGC TGGCCATACT CCATAAAGCC CTGCATATTC GGGCAGAGAA TTCTAGTACC
  Y
  AGGGCAAAAC AGGACAAGTG GGAAGGTCAC TTCCACCCTC TTGGGTAGTA GACAACCCTG
  TCCACAGGCC TGAGAGTTCA AGGCCTGAGG AGCTGAGGTA GAGTATGGGA ATAATTTTTG
  CCTAGAGTAT CCTATCAAGT TACTCTGCTA AAAGCCAAAT GCCTGTGAGG GAGGCAGACA
  GTCACAGGCA AGACAGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46412950	mCV23332168	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss137081828	ENSMUSSNP2047859	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323234349	CHEV_9_123702546	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30484349					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622493 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	1362 bp upstream
Tssr92158	transcription start site region 92158	1356 bp upstream
Tssr92159	transcription start site region 92159	1332 bp upstream
Tssr92160	transcription start site region 92160	957 bp upstream
Tssr92161	transcription start site region 92161	936 bp upstream
Tssr92162	transcription start site region 92162	1397 bp downstream