rs30488300 SNP Detail

Summary

• ID
  rs30488300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51366959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTGTATTT AAACCCAGTA TAATTTGGAA AAAAAAGTTT
  CCTGGCATAA TTCAATCTCT GATGCACAAG GAACTGTAGT AACATTGAAA CTCAACTCAG
  R
  GTAGTGTCAT TTCTTCAAAG AAATAGGTTC TAAAGATAAG CTACCTGTAC TAGCTTAAGG
  GCTTAAAGGT CTGGCCTGGT TTCAGGCATA CAGAGAGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss39190826	mCV23506946	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G		A
ss49182483	NES12491421	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		G	A	G		G		G
ss139475206	ENSMUSSNP4901352	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss324621301	CHEV_14_51749177	CHEVERUD	SCREENING_POP	f	SNP												A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30488300					SNP	A	A	A	A	A	G	A	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182483	NES12491421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51366959 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	524 bp downstream
Rr491778	regulatory region 491778	925 bp distal
Rr491779	regulatory region 491779	424 bp distal
Rr491780	regulatory region 491780	1523 bp proximal
Tssr125412	transcription start site region 125412	576 bp downstream
Tssr125413	transcription start site region 125413	555 bp downstream
Tssr125414	transcription start site region 125414	509 bp downstream
Tssr125415	transcription start site region 125415	484 bp downstream
Tssr125416	transcription start site region 125416	452 bp downstream
Tssr125417	transcription start site region 125417	430 bp downstream
Tssr125418	transcription start site region 125418	389 bp downstream
Tssr125419	transcription start site region 125419	363 bp downstream