rs30489302 SNP Detail

Summary

• ID
  rs30489302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70313768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAAAACC CTCATACCCT
  CGCCCCTAAA AGTTCTTGCC CACTGCGCAA CTAGCTAATC CGCTACACAT TCCCGGGCCA
  CTGCGCTCAA CTGAGAGTCA GCGCGGGGTC AGGAACCCCA AGGGAGGGGC CGGGGCTGCG
  GGCGGTGAAT CAGAATGATG TCCGCACGAA AGTTCTAAGT GTCCAAGAAT AAGAAGCCTT
  R
  GGACATTAGA ACCCCTTCCC CAAAGGAAAA TACTTCATCT CTCCATCTGA ATCCAGTCAA
  GGATAAGAAG GAAAGACAGA AGTTGTGTGG GGGAGCCTGG CTTGAAGCGG TCACCTCTCC
  CATTCCTAGA CTGCTAAGGA ACCTGTGTCC TGGTGTACTG AACTCTTTCT AAATGCTGGG
  AGTGCTGGAG ACCAATTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39190838	mCV25164246	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30489302					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70313768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6680	CpG island 6680	119 bp distal
Cpgi6681	CpG island 6681	293 bp proximal
Egr3	early growth response 3	998 bp upstream
Gm63137	predicted gene, 63137	593 bp downstream
Rr404186	regulatory region 404186	421 bp upstream
Rr494833	regulatory region 494833	1201 bp distal
Rr494834	regulatory region 494834	1461 bp distal
Rr494835	regulatory region 494835	607 bp distal
Rr494836	regulatory region 494836	394 bp proximal
Tssr126385	transcription start site region 126385	1152 bp downstream
Tssr126386	transcription start site region 126386	1120 bp downstream
Tssr126387	transcription start site region 126387	588 bp upstream
Tssr126388	transcription start site region 126388	607 bp upstream
Tssr126389	transcription start site region 126389	849 bp upstream
Tssr126390	transcription start site region 126390	887 bp upstream
Tssr126391	transcription start site region 126391	987 bp upstream
Tssr126392	transcription start site region 126392	1056 bp upstream
Tssr126393	transcription start site region 126393	1690 bp upstream