rs30490872 SNP Detail

Summary

• ID
  rs30490872
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:79204429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTCTGTTTT CTTTGATTAC CTGTGGCCTT TCTATCTTTG TATTAGTATT TGTTCATTTA
  AGGAAGCAAG CACCTCTTCA GTTTTCAGAC TGACTTTGAC AGTGACAACC ATGTAGTAGC
  CATCAGGACC AGAGATTCTA GGAGGGCAAC TCAGTGAGGT TCTTTTTTTT TTTTTTTCCC
  ACTGTTACTT TTTTTATTAG GTTTTTTCTT CATTTACATT TTCAATGCTA TCCAAAAGTA
  CCCCATACCC TCCCCCTCAC TCCCCTACCC ACCCACTCCC ACTTCTTGGC CCTGGCGTTC
  M
  CCTGTACTGA GGCATATAAA GTTTGCAAGA CTGATGGGCC TCTCTTTCCA CTGATGGCTG
  ACTAGGCCAT CTTCTGATAC ATATGCAGCT AGAGACACGA GCTCCGGGGG TACTGGTTAG
  TTCATATTGT TGTTCCACCT ATAGAGTTGC AGACCCCTTT AGCTCCTTGG GTGCTTTCTC
  TAGCTCCTCC ATTGGGGGCC CTGTGATCCA TCCAATAGCT GACTGTGAGC ATCCACTTCT
  GTGTTTGCCA GGCCCCTCAC AAGAGACAGC TATATCTGGG TCCTTTCAGC AAAATCTTGC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39190958	mCV24524195	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30490872					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79204429 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm6997	predicted gene 6997			421 bp upstream
Tssr126779	transcription start site region 126779			121 bp downstream
Tssr129883	transcription start site region 129883			395 bp upstream
Vwa8	von Willebrand factor A domain containing 8			Intron
				Noncoding-Transcript-Variant