rs30491347 SNP Detail

Summary

• ID
  rs30491347
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95738787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAC ATACTGGGTT GTTGTTGTTG
  K
  TGGTGGTGGT GGTAGTGGCT TTTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46414066	mCV23540357	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss136829846	ENSMUSSNP5194401	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss323104511	CHEV_9_95757153	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30491347					SNP	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95738787 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	within coordinates
Atr	ataxia telangiectasia and Rad3 related	863 bp upstream
Cpgi22158	CpG island 22158	646 bp proximal
Rr206894	regulatory region 206894	213 bp proximal
Rr368834	regulatory region 368834	676 bp upstream
Rr401608	regulatory region 401608	1788 bp upstream
Tssr86577	transcription start site region 86577	894 bp upstream
Tssr86578	transcription start site region 86578	960 bp upstream
Tssr86579	transcription start site region 86579	1210 bp upstream
Tssr90940	transcription start site region 90940	825 bp downstream
Tssr90941	transcription start site region 90941	1130 bp downstream
Tssr90942	transcription start site region 90942	1147 bp downstream