rs30492231 SNP Detail

Summary

• ID
  rs30492231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37460463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTATGGA TCTGGCAGTT
  GGAAGGGACA GCACCTAACA CTGTGGTTTT GAGGAATCTG CGAGGGTTTT CAGGAGCCTT
  GAGAGACTGT GGAGAGACCT TAGAGAATAT TGTGAGTATT TCCATTTTTA TTCTAAGGCA
  AATCTACAAA CAGCTTCTCC CTTGGCTCTA AAACAGGTAT GTATTACTGG GGACTTCAGA
  Y
  AGCACTTTTT GTGGAAATTT TGCGGCAAGA CGCGTTATCT CTTTTGTCAA GTGCCATCTG
  TCTGTCTCCA TGGGACTTAC GTATGCTCAA CACCTGGTCT GACCTGAAAG GTTTGCGACC
  TTTTCCCTTG AATTACACAC AGCAGCCTGA GGGCTGAATT AAAAGCTGTT GAACGGGCTC
  CTGCAAGAGA CAGGAAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47454331	NES11497073	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30492231					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47454331	NES11497073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37460463 () rs orientation: forward

Symbol	Name	Function Class
AI429214	expressed sequence AI429214	295 bp upstream
Cpgi20273	CpG island 20273	217 bp proximal
G630064G18Rik	RIKEN cDNA G630064G18 gene	within coordinates
Gm63701	predicted gene, 63701	within coordinates
Tssr76927	transcription start site region 76927	242 bp upstream