rs30493057 SNP Detail

Summary

• ID
  rs30493057
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6095970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTTTATGT ATTTTTCTTA AGTGCTCTAT CAGTAATGAC
  AATTCTGAAA GCCCCTGTGT TATATTTTAA CAACACAGTC ACCTCCGGTT CTGTATTCAC
  W
  GTCCGTGTTG TGACTCCCAC AGTATAAATT CCTCCAGTTG ATCTTCATGA ATTCTTATAT
  TTGATCCCCC CCCCCCTTAG GCCTCTGAAT TCCGAGTGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44933682	mCV24718636	ABI	CRAMUS_MOUSE	f	SNP	T	T	A					T		A
ss50575704	NES13653298	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A		A	A	T	A		A	T	A	A		A
ss146014866	ENSMUSSNP5374820	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							A
ss325717978	CHEV_19_6045940	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30493057					SNP	T	T	A	A	A	T	A	T	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575704	NES13653298	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6095970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	274 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	1118 bp upstream
Gm59262	predicted gene, 59262	162 bp upstream
Rr370438	regulatory region 370438	368 bp upstream
Rr405816	regulatory region 405816	1459 bp downstream
Rr405817	regulatory region 405817	within coordinates
Rr543275	regulatory region 543275	1500 bp distal
Rr543276	regulatory region 543276	1636 bp distal
Rr543277	regulatory region 543277	within coordinates
Rr543278	regulatory region 543278	119 bp proximal
Rr543279	regulatory region 543279	733 bp proximal
Rr543280	regulatory region 543280	1072 bp proximal
Rr543281	regulatory region 543281	1175 bp proximal
Rr543282	regulatory region 543282	1368 bp proximal
Rr543283	regulatory region 543283	1431 bp proximal
Rr543284	regulatory region 543284	1479 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	636 bp upstream
Tssr154538	transcription start site region 154538	164 bp upstream
Tssr154539	transcription start site region 154539	689 bp upstream
Tssr154540	transcription start site region 154540	1081 bp upstream
Tssr154541	transcription start site region 154541	1115 bp upstream
Tssr154542	transcription start site region 154542	1141 bp upstream
Tssr157816	transcription start site region 157816	1039 bp upstream
Tssr157817	transcription start site region 157817	1008 bp downstream
Tssr157818	transcription start site region 157818	1470 bp downstream