rs30493160 SNP Detail

Summary

• ID
  rs30493160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37460543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGACTGT GGAGAGACCT
  TAGAGAATAT TGTGAGTATT TCCATTTTTA TTCTAAGGCA AATCTACAAA CAGCTTCTCC
  CTTGGCTCTA AAACAGGTAT GTATTACTGG GGACTTCAGA TAGCACTTTT TGTGGAAATT
  TTGCGGCAAG ACGCGTTATC TCTTTTGTCA AGTGCCATCT GTCTGTCTCC ATGGGACTTA
  Y
  GTATGCTCAA CACCTGGTCT GACCTGAAAG GTTTGCGACC TTTTCCCTTG AATTACACAC
  AGCAGCCTGA GGGCTGAATT AAAAGCTGTT GAACGGGCTC CTGCAAGAGA CAGGAAAGGG
  GCGGGATACC GGAGACCACT CACTGCGCAT GACCGGCCCG CGTTGCCATG TCAACCAGGA
  AAGGCATACC CGGAAGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47454340	NES11497078	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30493160					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47454340	NES11497078	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37460543 () rs orientation: forward

Symbol	Name	Function Class
AI429214	expressed sequence AI429214	215 bp upstream
Cpgi20273	CpG island 20273	137 bp proximal
G630064G18Rik	RIKEN cDNA G630064G18 gene	within coordinates
Gm63701	predicted gene, 63701	within coordinates
Tssr76927	transcription start site region 76927	162 bp upstream