rs30493979 SNP Detail

Summary

• ID
  rs30493979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37460680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGCGGC AAGACGCGTT
  ATCTCTTTTG TCAAGTGCCA TCTGTCTGTC TCCATGGGAC TTACGTATGC TCAACACCTG
  GTCTGACCTG AAAGGTTTGC GACCTTTTCC CTTGAATTAC ACACAGCAGC CTGAGGGCTG
  AATTAAAAGC TGTTGAACGG GCTCCTGCAA GAGACAGGAA AGGGGCGGGA TACCGGAGAC
  Y
  ACTCACTGCG CATGACCGGC CCGCGTTGCC ATGTCAACCA GGAAAGGCAT ACCCGGAAGA
  AGAAGCTCGC GGCACTCAAC TACACCAAAG ATTGTGCCCT GTCGGCTCCT CTTTACTGGT
  TCCAGACCCA TTTTTGACCA GAGCAAAGCA GATGAGGAAC TGAGTCCGAG ACAATGGGGT
  GGCCACCTGC TCAGAAGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47454349	NES11497082	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30493979					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47454349	NES11497082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37460680 () rs orientation: forward

Symbol	Name	Function Class
AI429214	expressed sequence AI429214	78 bp upstream
Cpgi20273	CpG island 20273	within coordinates
G630064G18Rik	RIKEN cDNA G630064G18 gene	within coordinates
Gm63701	predicted gene, 63701	within coordinates
Tssr76927	transcription start site region 76927	25 bp upstream