rs30493982 SNP Detail

Summary

• ID
  rs30493982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37460863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGGATAC CGGAGACCAC
  TCACTGCGCA TGACCGGCCC GCGTTGCCAT GTCAACCAGG AAAGGCATAC CCGGAAGAAG
  AAGCTCGCGG CACTCAACTA CACCAAAGAT TGTGCCCTGT CGGCTCCTCT TTACTGGTTC
  CAGACCCATT TTTGACCAGA GCAAAGCAGA TGAGGAACTG AGTCCGAGAC AATGGGGTGG
  Y
  CACCTGCTCA GAAGCCGGAG GACTCAAAAG AAGAGCACGG AGGCCCGGCC CAGACGGACG
  TCTGTGCTAC TCAAGTTTCA GAAGAGTTCC CCGGGTCCTG TGCAGATGAG GTACTGAGTT
  CTGGTTCCAT CAGCTTCTCT GGAGAATTAC AATCCTATTC ACACACCTCT GAGAGCCCAG
  TCGAGACCAA AACGCCGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47454352	NES11497083	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30493982					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47454352	NES11497083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37460863 () rs orientation: forward

Symbol	Name	Function Class
AI429214	expressed sequence AI429214	within coordinates
Cpgi20273	CpG island 20273	within coordinates
G630064G18Rik	RIKEN cDNA G630064G18 gene	within coordinates
Gm63701	predicted gene, 63701	175 bp upstream
Tssr76927	transcription start site region 76927	98 bp downstream