rs30494581 SNP Detail

Summary

• ID
  rs30494581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126260498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCCTTC ATAGAAACAC
  AGGGGTTGGG GGGGGAAATG GGATGGGATA GGGTATTTGC AGAGGAGAAA CTGGGAAGGG
  GGAAAACATT TGAGATGTAA ATAAAATAAC CAAATATATT TAAAAATAAC AATTATTAAA
  ACAATTTCAC TGAACATTTT GTAGTTAGGT GGGGATTTCC TGGGAGGATT GCAGCCCTTC
  Y
  GAGCCTCTCT AGGAACTTTA GAGTCCTTGG CTTCATTCAG CCCATCAGCA AACTCTTGTT
  TCAATGTACT TAGGGTCTGC TCCTACACAC AAAGTCATGC AAGGCTCTCC TTTGCAATGA
  AATGAGAAAG TGCCCTCAGT AAAGCATTAG CGTATTTGTT GTGGACGAGA TATTTCTTCA
  GATACAGCTC CTTCGAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46954371	NES10684303	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	C	C		T	C	C	T		C
ss320945458	CHEV_3_126169767	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30494581					SNP	T	T	C	T	C	T	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954371	NES10684303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126260498 () rs orientation: forward

Symbol	Name	Function Class
Gm17225	predicted gene 17225	within coordinates
Gm46823	predicted gene, 46823	1498 bp upstream
Rr375709	regulatory region 375709	1827 bp downstream