rs30494583 SNP Detail

Summary

• ID
  rs30494583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126260514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGGGGT TGGGGGGGGA
  AATGGGATGG GATAGGGTAT TTGCAGAGGA GAAACTGGGA AGGGGGAAAA CATTTGAGAT
  GTAAATAAAA TAACCAAATA TATTTAAAAA TAACAATTAT TAAAACAATT TCACTGAACA
  TTTTGTAGTT AGGTGGGGAT TTCCTGGGAG GATTGCAGCC CTTCCGAGCC TCTCTAGGAA
  Y
  TTTAGAGTCC TTGGCTTCAT TCAGCCCATC AGCAAACTCT TGTTTCAATG TACTTAGGGT
  CTGCTCCTAC ACACAAAGTC ATGCAAGGCT CTCCTTTGCA ATGAAATGAG AAAGTGCCCT
  CAGTAAAGCA TTAGCGTATT TGTTGTGGAC GAGATATTTC TTCAGATACA GCTCCTTCGA
  GTTGTTACTT CACATTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46954373	NES10684304	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30494583					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954373	NES10684304	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126260514 () rs orientation: forward

Symbol	Name	Function Class
Gm17225	predicted gene 17225	within coordinates
Gm46823	predicted gene, 46823	1482 bp upstream
Rr375709	regulatory region 375709	1843 bp downstream