rs30494993 SNP Detail

Summary

• ID
  rs30494993
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:143576325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAATAC AGCTCACTGA
  AATGTGTCCT AAATCTCCTT TACTAGCCTC TATTATCACT TTTCCTCTAA ACAAGTGGTC
  CTCAGCCCTC CTGATGCTAC AAACCTTTAA TACAATTCCT CCTGTTGTGA CCTCCAACTA
  AAAAATCATT TTCATTGCTA CTTCATAACT GTAACTTTGC TGCTGTTATA AATGTAACTA
  W
  GTTTTCTGAT GGTCTCAGGT GATTGATCCC TGGAAAGGAT CTTTCCACGC CCTCCAGAAG
  GGTCTCAACT CACAGGTTAA GAACCACTGC TCAAAACTGA TATTATGTCC AATCACTCAT
  TAGTAGTTAT TATACAAATT ATCATAAAAA TAGAAAGCAC TGAACACATT AAGGGTACGG
  ACTAATCTTT TATCGATATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss44933810	mCV23583681	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss145631030	ENSMUSSNP6049941	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs30494993					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143576325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component			Intron
				Noncoding-Transcript-Variant
Cpgi835	CpG island 835			1469 bp proximal
Rr419927	regulatory region 419927			1843 bp proximal