rs30495445 SNP Detail

Summary

• ID
  rs30495445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126260584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTGAGAT GTAAATAAAA
  TAACCAAATA TATTTAAAAA TAACAATTAT TAAAACAATT TCACTGAACA TTTTGTAGTT
  AGGTGGGGAT TTCCTGGGAG GATTGCAGCC CTTCCGAGCC TCTCTAGGAA CTTTAGAGTC
  CTTGGCTTCA TTCAGCCCAT CAGCAAACTC TTGTTTCAAT GTACTTAGGG TCTGCTCCTA
  Y
  ACACAAAGTC ATGCAAGGCT CTCCTTTGCA ATGAAATGAG AAAGTGCCCT CAGTAAAGCA
  TTAGCGTATT TGTTGTGGAC GAGATATTTC TTCAGATACA GCTCCTTCGA GTTGTTACTT
  CACATTGGTT TTGTGCCTAT TGATCAGGTC ATATTTAGCT TAATGGTCCC CTGAATTGTG
  AGATCCATTT TCTTTAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46954375	NES10684305	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	C	C	C		T	C	C	T		C
ss320945459	CHEV_3_126169853	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30495445					SNP	T	T	C	T	C	T	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954375	NES10684305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126260584 () rs orientation: forward

Symbol	Name	Function Class
Gm17225	predicted gene 17225	within coordinates
Gm46823	predicted gene, 46823	1412 bp upstream
Rr375709	regulatory region 375709	1913 bp downstream