rs30495585 SNP Detail

Summary

• ID
  rs30495585
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105358663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCATACC AGTCTCCTTC TCTACTCTGT GAGCATTAAG
  GAAGGCTAGA GCCGCTAACA ATCGTTTGCT GATTTCCTCT GTAGCACTGA GTAATTTCGC
  M
  AAATCATAAA ATTAAAAAGG AAAAGACAAG CATAAAACAT TGCTCCTCTG ACAGCGCTCT
  TGAGAGAAAA AACACATAGG TAACTATTAT ATTTGAGAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47953703	NES12018894	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	C	A	C	C	A	A		A	A	A	C
ss147504674	ENSMUSSNP4043840	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							C
ss323449355	CHEV_10_104959858	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30495585					SNP	A	A	C	A	C	C	A	C	C	A	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47953703	NES12018894	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105358663 () rs orientation: forward

Symbol	Name	Function Class
4930588G05Rik	RIKEN cDNA 4930588G05 gene	1238 bp downstream
Rr438483	regulatory region 438483	1810 bp distal
Rr438484	regulatory region 438484	14 bp distal
Rr438485	regulatory region 438485	110 bp proximal
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr99169	transcription start site region 99169	1007 bp upstream
Tssr99170	transcription start site region 99170	785 bp upstream