rs30495588 SNP Detail

Summary

• ID
  rs30495588
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105358899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTGCTC CTCTGACAGC
  GCTCTTGAGA GAAAAAACAC ATAGGTAACT ATTATATTTG AGACCCCGTA TAATTGACTA
  GACATTAAAA TAAGTCCAAT CCGAGTCCAC AAGGAGGAAG TGCAAACTGA AATGCAAATT
  ACAAAAGCAC GTGACAAGGG TTAGCTAGCA GATTCCTAGC AGGGTCTTAG TGCCTCACCC
  R
  CCAGAGCCGC AACAAGATGC AGTCCTGGAG CCTGGAAGTC ACTTCCTGGG GTCTCTAACC
  TGAGACCTGC TAGGCAGATG CGTAGCAGCA AACACACTAG CTGTCTGAGA AACACCTTCT
  GGTGTGCTCT CAAGGTCGGG TTGGGACTCT GACTGTGTTC TTATTTTTAG GGAGCTTGGT
  TATCAAACAG CACCTTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47953707	NES12018896	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	G	A	A		A	A	A		A
ss147504703	ENSMUSSNP2777393	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
ss323449358	CHEV_10_104960094	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30495588					SNP	A	G	A	G	A	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47953707	NES12018896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105358899 () rs orientation: forward

Symbol	Name	Function Class
4930588G05Rik	RIKEN cDNA 4930588G05 gene	1002 bp downstream
Rr438484	regulatory region 438484	250 bp distal
Rr438485	regulatory region 438485	within coordinates
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr99169	transcription start site region 99169	1243 bp upstream
Tssr99170	transcription start site region 99170	1021 bp upstream