rs30495592 SNP Detail

Summary

• ID
  rs30495592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105359351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAGGAGG AAGTGTTAGA
  AGAAAAAACA AATCCAGTAT GAGATTCCCC CAAAGGCAAG GTTCATATAA ATTTGGACAT
  AAGTATAAGA GAATGAATCC ACTCTGAACA TCCCCTAAGT CCTAAGTATG CAAAGCCAGA
  TTATAGCCCC AATCCAAAAC AACACCCAGA GGGATCTTGA TGGGAGCCTT TTACATACTC
  Y
  CATACTTCAG AAATCTCCAA AGTGCCTTTG GTCTGTGTCA GTCACTACTA GAGAGGGGAG
  CAATGACAAG ACAGAAAACA GCAGTCATTA GCTAGCACTC TGAAACATGC AGGGATTCCT
  GCCTGTGACT AAGTGGAGAT CCTACAGCAG GCTGCTACAG AGCAGATGCT CAACTCGAAG
  GGACTGTGTG CCTTTCTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47953711	NES12018898	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30495592					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47953711	NES12018898	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105359351 () rs orientation: forward

Symbol	Name	Function Class
4930588G05Rik	RIKEN cDNA 4930588G05 gene	550 bp downstream
Rr438484	regulatory region 438484	702 bp distal
Rr438485	regulatory region 438485	within coordinates
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr99169	transcription start site region 99169	1695 bp upstream
Tssr99170	transcription start site region 99170	1473 bp upstream