rs30496233 SNP Detail

Summary

• ID
  rs30496233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126261546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATATGCT CAGTAGAATC TCCAAGTTCA ATTGGGTGTT
  TCCTCAATGG CCAAATAAAA AACTACTGCT GCCTTCACCA ACGGGCATAG GACCAGCTTA
  R
  GATACCCAAG AAAGGTCACG GGTATGTGGA CAACCATAAA ATAAGATCCA TTTTATTATG
  AAAGTCCTTT TTTTTCTCAA TATTTGCTAA GGTTTCAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45478619	mCV23908548	ABI	CRAMUS_MOUSE	f	SNP		A	A			G		A
ss46954393	NES10684245	PERLEGEN	MM_PANEL2	f	SNP	A			G	G		A	A	G		A	G		A
ss135833499	ENSMUSSNP3411152	ENSEMBL	ENSEMBL_Sanger	f	SNP			A					A
ss320945464	CHEV_3_126170815	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30496233					SNP	A	A	A	G	G	G	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954393	NES10684245	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126261546 () rs orientation: forward

Symbol	Name	Function Class
Gm17225	predicted gene 17225	within coordinates
Gm46823	predicted gene, 46823	450 bp upstream