rs30497101 SNP Detail

Summary

• ID
  rs30497101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126262295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCAGGCA TGCAGGCAGG
  GTGCTGGAGC AGTAGCTGAG TGCTCACATC TGATCCTTAA GTTGTAGAAA AAGAGGAAAG
  GAGAGAAGGA GGGAGGGAGG AATGGAGGAA AGAAGAGAAG GAGGAAGAAA CAGGAAGAGA
  GGGAGGGAGA GGGGGTGGAA AGGAACTGGG CCTGGCATGA GTTTTTGAAA CCAAAAAGCC
  Y
  ATTCCCACTG ACACATTTCC TCCAACAAGG CCTCGTCTCC TAATCATTCT TCAACAGTTC
  CAGGAACTAG AGACCAAGCA TTCAAACATA TGTACCTATG ATAGCCATTC TCATTCAAAC
  CACCGTAACT TGCTTCATAA TTCCCAGCAA GAGGACGAGG AAGAACACAC TGTTTAACCC
  TACTTTAGAG CTGAAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46954401	NES10684250	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30497101					SNP	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954401	NES10684250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126262295 () rs orientation: forward

Symbol	Name	Function Class
Gm17225	predicted gene 17225	within coordinates
Gm46823	predicted gene, 46823	within coordinates