rs30497568 SNP Detail

Summary

• ID
  rs30497568
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151994405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTAAGTT ATTACAAATA
  GCCTGGCCAT GGCATAAATG AATGCTGTTT GTGCCAGCCA GGGTGGTGCA CATCTGGGGT
  TCCAACACCC ACAAGGCCGA GGGAAAAGGA TCAGCGCACA TTTGAGTCTA GCCTGATCTA
  CAAAGTGAGT TCCAGGCCAG CCGGAGGAGC CAACAGGCTC TGTCTCAACA ACAGTAAATC
  M
  AGAGTGTTTG GTGGATCTTT CTAATTACTA ACAAAGGTTT CATTCATAGT TAAAATTTAA
  ATATACATTT TACTCTAAAA CCTGCTAAAC TCTTTCTTCA TCTGGCAGGA CACGCAGCAC
  AAGCCTGTCT GTGTGAGGTG AGGGCACAGC TGTTGGCACT GGTGCCGGCT CAGCTTGTCA
  GGCTTGGTGC CAAGGACTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45434790	mCV24027923	ABI	CRAMUS_MOUSE	f	SNP		C	A						C
ss51060140	NES13425260	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A	C	C	C	C	A	C	C	A	C
ss136101759	ENSMUSSNP2022029	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30497568					SNP	C	C	A	C	A	C	A	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060140	NES13425260	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151994405 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587515	regulatory region 587515			714 bp distal
Rr587516	regulatory region 587516			74 bp proximal
Tssr32405	transcription start site region 32405			1558 bp upstream