rs30497657 SNP Detail

Summary

• ID
  rs30497657
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164268110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTACAAGCG TGGGGTAGTA GTCCTAACCA CAGTACTTCC
  CATTGCATGC TTGTCTCTGT GGGAAGATTA AATATCTGTT GAAAGGTACA CTAACATTCG
  M
  AAGAGATCCT TCAAGACAAG CAGCCAGCCA GCCAGCCACT GACAACTTGT TCCTGTCTCT
  GGTTGCATAA AGGAGCTTTG ATGCATCTTT AAGGTAATA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44933633	mCV24721496	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	A
ss145978677	ENSMUSSNP2386616	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30497657					SNP	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164268110 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13721	regulatory region 13721	1910 bp distal
Rr20253	regulatory region 20253	710 bp distal
Rr25447	regulatory region 25447	1625 bp distal
Rr25448	regulatory region 25448	1150 bp distal
Rr31656	regulatory region 31656	within coordinates
Tssr14743	transcription start site region 14743	1017 bp downstream
Tssr14744	transcription start site region 14744	1066 bp downstream