rs30497699 SNP Detail

Summary

• ID
  rs30497699
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126262875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTGATT CTGCTATGTG
  CAATTATGGG TTTCTACCTA TTCTGAAAAT TTTACAAGCA TTTAAAATCC TGCTGCCTTG
  CCCAGAATTG TTTTGAGCTG GACAATGAGA CATCCTTCAC AGACAATTTT AACACAGTAA
  ACAAATAAAG AATGAGTTTC CTTAGAAGAA CTGCAGGGGT AGGCAGAAGA ACGCATAGAT
  W
  ATTTTGTAAG ATATGAGCAG GGACCTGGTC ATCTTTCTTC TCTGTCATCC TGAACAGTCA
  GGTCCTTCTC CTCCTGTTAC ATTTTGTTCT TGTCATATTT TAGAAACAAG TAAAAGAAGG
  GGAAATGAGA AACACGCCTG CAGCCTCTCA CACGCGGAAG ACCCTCCTAC ACTACAAGCT
  ACATCTGGTG CACGTAGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46954409	NES10684259	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	T	A	T	A	A		A	A		A
ss135833520	ENSMUSSNP7186967	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					A
ss320945470	CHEV_3_126172144	CHEVERUD	SCREENING_POP	f	SNP										A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30497699					SNP	T	T	T	A	T	A	T	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954409	NES10684259	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126262875 () rs orientation: forward

Symbol	Name	Function Class
Gm17225	predicted gene 17225	within coordinates
Gm46823	predicted gene, 46823	within coordinates