rs30498347 SNP Detail

Summary

• ID
  rs30498347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37459435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTAGAAT GTTAAACTGT CCACAGTATC TCGCTACTTT
  TATGAAAAGA AAATTGATTA ATTTCCTATT CATATTTTTT GGTCACAGAT GAAGCTATTT
  Y
  TAAAAAACAG ATAAACTTAC AGTGCTAAAA GATAGAAGTT GGATGAGCCT GGGTATTAGC
  ACATGGACGT TATTAGAGGA TGTACTTTAA AGACACATTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
ss47454301	NES11497063	PERLEGEN	MM_PANEL2	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
rs30498347					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47454301	NES11497063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37459435 () rs orientation: forward

Symbol	Name	Function Class
AI429214	expressed sequence AI429214	1323 bp upstream
Cpgi20273	CpG island 20273	1245 bp proximal
G630064G18Rik	RIKEN cDNA G630064G18 gene	within coordinates
Gm63701	predicted gene, 63701	within coordinates
Rr662471	regulatory region 662471	697 bp proximal
Rr662472	regulatory region 662472	1243 bp proximal
Tssr76927	transcription start site region 76927	1270 bp upstream