rs30498353 SNP Detail

Summary

• ID
  rs30498353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37459460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA AAACAGATAA ACTTACAGTG
  Y
  TAAAAGATAG AAGTTGGATG AGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss46241515	mCV24565089	ABI	CRAMUS_MOUSE	f	SNP	T	T			C		T
ss47454307	NES11497065	PERLEGEN	MM_PANEL2	f	SNP			T	C		T		T		T		T
ss144483885	ENSMUSSNP6762994	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					T
ss322602144	CHEV_8_38055360	CHEVERUD	SCREENING_POP	f	SNP									T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs30498353					SNP	T	T	T	C	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47454307	NES11497065	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37459460 () rs orientation: forward

Symbol	Name	Function Class
AI429214	expressed sequence AI429214	1298 bp upstream
Cpgi20273	CpG island 20273	1220 bp proximal
G630064G18Rik	RIKEN cDNA G630064G18 gene	within coordinates
Gm63701	predicted gene, 63701	within coordinates
Tssr76927	transcription start site region 76927	1245 bp upstream